NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232646_1002322

Scaffold Ga0232646_1002322


Overview

Basic Information
Taxon OID3300021978 Open in IMG/M
Scaffold IDGa0232646_1002322 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8827
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NamePerseverance vent field water column
CoordinatesLat. (o)15.47990499Long. (o)144.50763029Alt. (m)Depth (m)3625
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026401Metagenome198N
F027865Metagenome193Y
F041248Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0232646_100232213F041248GAGMRSKQHGKRLRQEGAIKRIETSILVHEEQLKSNKNDDEKKLLKKKIERAQTTVENTKGNM
Ga0232646_100232214F027865N/AMDTYDMKFCKLTRKFEEKSVTEYNNIYNDMLTDQFTAHTGMYTSLF
Ga0232646_10023226F026401N/AMIKVESILKWKVEGSLLKKLKMIRAQILSKNSDAVAISDNDLHITLAAGTGWQKLKSRIKAKDIDEPEFSMDINPTVKVIEKGGSKSWYVKLKNQQDWKEYVMDSLQGTYDSGRVYHISLANLTGNKVDSVALVVEQKNHHNINAKKYHKKFKDFRKRY
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