NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232641_1045173

Scaffold Ga0232641_1045173


Overview

Basic Information
Taxon OID3300021979 Open in IMG/M
Scaffold IDGa0232641_1045173 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameHafa Adai vent field, Mariana back arc basin
CoordinatesLat. (o)16.96131294Long. (o)144.8678188Alt. (m)Depth (m)3277
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007771Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0232641_10451731F000615N/AVSGLERPVNIMCRIRSFYECSDGTMGWTEMVVSYDTDIAAHIRHLSTGGRMVITEHIDLV
Ga0232641_10451738F007771N/AMETIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRALAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAYGLEKWLQLGYTATWNKIESGEI
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