NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232641_1131737

Scaffold Ga0232641_1131737


Overview

Basic Information
Taxon OID3300021979 Open in IMG/M
Scaffold IDGa0232641_1131737 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameHafa Adai vent field, Mariana back arc basin
CoordinatesLat. (o)16.96131294Long. (o)144.8678188Alt. (m)Depth (m)3277
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036742Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0232641_11317372F036742AGGAGMPLWSSSLSPDSMEYEFDVTAGVGALEFTIHDNILLNGTDGAPATNAGFRLLLEEQIEKRPTWLNADERSNCFANNEGWWLRHKKNSAGTQYWDECLVALGGLAGTDAVTGLGVSQITHVSFEGLTTGAANNNPAYSVASGGSLATAYVSVVWNEPVDYVLSTLPTLVVTHTAT
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