NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1000012

Scaffold Ga0196883_1000012


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1000012 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19757
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012654Metagenome278Y
F055689Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0196883_10000121F012654N/ARTSRPQKTKTDMTIEQSKKYNELLNLYEARTDLTPGQLQLLFTLACVILEERDLQSYCDQHGTCYQVTGKSGDVYSRMRPEWQQLKEARHRKQIIITRLENWIGEGKPVTDENAEYFD
Ga0196883_100001222F055689AGGAGMSIARLIYMNKTLMYLPMKEVLECPEIKRMNLPESFTETLLESCYLYEDMFKRSFNAAEKYYMERLKRHISAIATEVDRQYYKMKRGHLSDVKIRQSMFEEPKPETN
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