NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1000186

Scaffold Ga0196883_1000186


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1000186 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6442
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041217Metagenome / Metatranscriptome160N
F059018Metagenome / Metatranscriptome134N
F070161Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0196883_100018610F059018GAGMGIKVSPTLKRKLDAIDEMAEDAVERKMVAVATTTVLASPVDTGAFVNSWSFKDNLGGGRRKSSANKPTGQNPGSERGKALNNLVNDIRSTVEATSPGGAEREGISLQVDNYYFINRAPHAKSVETKYQIIDKVVRQHG
Ga0196883_10001867F041217AGGAMTPDYSLLPFQLSWVQLVRQEFKGYGTEWKRGDVFDWEQRGIPWRDVMSLFNRGFLMQEAPTENNQKKVVGDGLDELGPDELKVIVDNINAKVKLNTKTDREYQNKKCKASTITKKQRGHIRTWRNSPWADWEQA
Ga0196883_10001869F070161GAGGMSLSPSDLLFLVKDFGEQLTLRKVAKTGSYDTSSGSVSGSETKDYPFTGYFYNLAEGVFDSNQTRKGSRACVIPAKGLSVVPDDEDQIKGYDETVNIVAVKTIRSKGQPVCYLCEISE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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