NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1000357

Scaffold Ga0196883_1000357


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1000357 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4823
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009001Metagenome324Y
F012662Metagenome / Metatranscriptome278N
F048963Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0196883_100035710F048963AGGAGMNETFADFEPTDLPFDWSGVDHEAIKTGFDFFFSNNQITGFKLDNNGNYVRDQDGKLIPYRTSKQRHQPKSWFNNYYQ
Ga0196883_10003575F009001GGAGMSVTIYLTDHHGRKVAFFYRIDSERYLTCPQLIWCCRDYPEYQGTAESKEHFIEQAKDVMRELNKISQKTCSTCEKTLQGMEREGTKCSEHDFQ
Ga0196883_10003576F012662GAGMKETLLQPADMIEELMYHILWNEFDGELDPDHKYFPLYLSLQQLLEDETKRLEE
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