NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212030_1005255

Scaffold Ga0212030_1005255


Overview

Basic Information
Taxon OID3300022053 Open in IMG/M
Scaffold IDGa0212030_1005255 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1452
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0212030_10052552F003188AGAAGMKLLKDNIRKILKANIDVSYRISSTEPNKEDMNKKAFKDILTELQKIEERRDFMIDEIGMDMTLYEDQFFSVIENLFKLAFNQQQLELIQMYLYQLVPDKEWDGTITVQQDKKEKTVSFRTPEDVWNVILELK
Ga0212030_10052554F001222N/AMKTNQKLILETIKEVITESAKIKFAGHQFMLKVDVNEDPNKKGIKIQFIPTTFGQMSLTQQNDIAIELEQRLEDGLDEYGMKVERDRNLKDKTIIGFFVYIEYLDKIIRQALSSQNPGQPEAVEDEQV
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