NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212030_1007948

Scaffold Ga0212030_1007948


Overview

Basic Information
Taxon OID3300022053 Open in IMG/M
Scaffold IDGa0212030_1007948 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1264
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037202Metagenome / Metatranscriptome168N
F059882Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0212030_10079481F037202N/ARARHILSAYQDVNESQLAYICFPLIRRIFQSSGFFEEGDCPLTFTYETSVLPAFTYFKPDEEESSVATTQVYDFESSPNKEVVEKICSNCYYALDAEVGLTAELAERFRNELNEKHKGKHLIFGDPIMMREEGGERIYSYRCAVLPGGSRLHEGGYKE
Ga0212030_10079482F059882AGGAGGMNNVEILYQECKVCGKTFKLPTRKELEKSILFKASEVLGIDMGNGHTGGNSLLAMLNCSVECAKKTGE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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