NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212030_1020526

Scaffold Ga0212030_1020526


Overview

Basic Information
Taxon OID3300022053 Open in IMG/M
Scaffold IDGa0212030_1020526 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)889
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013377Metagenome272N
F087886Metagenome110N
F092867Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0212030_10205261F087886AGGAMSNFRKIWKLDLMDWDNSENKFVDRYSTYHTSKKKAVERAKSYIELIKVDKLGSVDERTKNSTSVHSASGDTLGYICSERL
Ga0212030_10205262F013377GAGGMTRKILKHWSLFYKHGERQFISAPSKEELNRAIFAGAYAPSPNSVTYYVEYERDIKDTCYNQVHEV
Ga0212030_10205264F092867N/AVHKHKETVHGKECLAYRTNKENIVVDLETFKAMSRPDKKEQDFGHCGDCRACWFKEVANISYPLH
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