NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224905_100143

Scaffold Ga0224905_100143


Overview

Basic Information
Taxon OID3300022058 Open in IMG/M
Scaffold IDGa0224905_100143 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1316
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028777Metagenome / Metatranscriptome190Y
F057387Metagenome / Metatranscriptome136Y
F081365Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0224905_1001432F028777GAGMLGLFARNKHSFTEMLFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECNCNFKVKGKLNMDGTPRKHYAYIKDWAS
Ga0224905_1001433F057387AGGAMSKLSKPLQAFWDNQIAHDNVKAAPFSGNCMFCTKAITEKDKDHSVCNTCWADLGDDE
Ga0224905_1001435F081365N/AMMDGIIGTVVSIVGGDMVNANNRRDFKAEEYNLYDVRKARPFWNQVCAANNWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHN
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