NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212023_1000046

Scaffold Ga0212023_1000046


Overview

Basic Information
Taxon OID3300022061 Open in IMG/M
Scaffold IDGa0212023_1000046 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8833
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003647Metagenome / Metatranscriptome475Y
F008695Metagenome / Metatranscriptome329Y
F076156Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0212023_10000461F008695N/AMIKEEIFLLKEYEISKVTHEWCESNDRWIYIEYNAQSKIIGLNFMQGDEYDYFKKSWCHNNQGLTEFYHSMIYTFPIEKASVNTLEFINKVMWAYHNATLDPKSST
Ga0212023_100004611F003647N/AMLIREWKLADIKNRASNKAFAKVTILTLDIETYKRDLREGSIGGVTYEEFEQVLEGYETELKIWNYITELIEKQ
Ga0212023_10000464F076156N/AMSKINEINEIAQYQADVILETLKEQVEWSIADYDLSGDDYYDLRDYTVYKTVIKLLEKAVFL
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