NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212023_1005022

Scaffold Ga0212023_1005022


Overview

Basic Information
Taxon OID3300022061 Open in IMG/M
Scaffold IDGa0212023_1005022 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F027811Metagenome193Y
F065133Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0212023_10050221F065133N/AMKKITRSVLALSILFSSCTKEPNWARNYGQPVYADNPTDIQLGGNISWSEGMSDAECIRKIKGFDSYDPSKPIFLSPILYDLSGVEDDKSPPSLKAEYMLFPHSINSMSEVWGWDYIDELKELYHENGDEGVQMFLDKYLDGDSTLGMKLKPLTWL
Ga0212023_10050223F000126N/AMVQQSINMRDYSITRKKGEWYDTRVVDSYGNKYQNYFETASEANEWIYYVWLKEDWFNSVDSQELLYRAIQDCKKIDEKNNITKIM
Ga0212023_10050224F027811N/AMIEYSEIELREMISNLRLVKEMSNKFGLQDKSEIELTKYELLLENHTNNKYKEIDEWLNKLINKNGTTKY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.