NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212023_1015045

Scaffold Ga0212023_1015045


Overview

Basic Information
Taxon OID3300022061 Open in IMG/M
Scaffold IDGa0212023_1015045 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F048232Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0212023_10150452F048232GAGMDGRIIRRMLNAESLPYEERVARIMFLREHRRNLLRAYCEDDVTKKEKDKLRQEIARVQKALKKLDPDGMFPP
Ga0212023_10150453F015079N/AMVQAQIESIQGKGDWKGRHGTMYTFEIAFNDGTVGEANSKSQEPPYKVGDEVYYEIKSDDQYGKKLKVSKNPPPPGGFQQFQPAKPNPDRDKQIIRGMCFKVAGMAWANQYKHKSFELPHQVMVKGVIALAKEYEQAFNEWMEE
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