NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212029_1000391

Scaffold Ga0212029_1000391


Overview

Basic Information
Taxon OID3300022063 Open in IMG/M
Scaffold IDGa0212029_1000391 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2873
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Belliella → unclassified Belliella → Belliella sp. DSM 107340(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036720Metagenome / Metatranscriptome169N
F060729Metagenome132Y
F060933Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0212029_10003912F036720N/AMDSTYVTNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDRYSDRTPLDVSFSFWWLDNYNSVVSFFLMCFPIIVFTEDLVHWLGLNFLPDAMKTENPMYIYYIFGLSFGWILEAILKKAKLIRNAQI
Ga0212029_10003913F060933N/AMDKVIIGAILLIQSIQTESFKNKIIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIFTAITILIISLFIRRWWSKRFK
Ga0212029_10003915F060729N/AMKLTELKEKIYQLNLKEYDGMHLGSGTILDAKRFVENHISFLESNPNNSTFLLYYNRLFEFYKKTKQWIAEKH
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