Scaffold Ga0224902

Basic Information
Taxon OID	3300022066 Open in IMG/M
Scaffold ID	Ga0224902_100001 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022066 Open in IMG/M

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61867
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (25.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

61867

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (25.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025477	Metagenome	201	Y
F028516	Metagenome	191	Y
F031892	Metagenome / Metatranscriptome	181	Y
F047903	Metagenome / Metatranscriptome	149	Y
F079949	Metagenome	115	N
F100998	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224902_10000110	F047903	N/A	MALKGSYDYKGIAVADAYVKISSVNWSCSSNSENYVKTAAVYNSDGTIKTPEVKADRWTQNTIGNWHANVYKDKAARDANPNNHICSISGSFDMDLKDSAKNPVKQAYVAAKAMDLYKGMADA
Ga0224902_10000128	F079949	N/A	MKQIEELGDKTIGIDIDGDKKPDFKIDVKSIAIVIGFIISGTMGYNNLKQEIELAKELPTYEVKETSDGLLLKQKVHYLEKELEKLEKKVSDIENKIYKR
Ga0224902_10000160	F100998	N/A	MTKDNNTDEFDLRLEISDMMWEVDRLKDVEQAYADSEEYEKASIVLARQKRLIRLIKNREKKLKQYDETL
Ga0224902_10000165	F031892	N/A	MTQKQFNIVVGTLDDHAIETMNKKGPEYTTGNQDVLNNFKSTADKLGVDPLVIWYAYFDKQCSSIAAHVKNEKLQQAEPMISRFGDIINYAKLGYALFYERHADTKRSNK
Ga0224902_10000168	F028516	AGGA	MKNLYQKLKPEIKTRLHRNSNNYAISIAGVIKTLKSKEYYNELTIGEIKQIRAFGDVTSTDILWPETMFNSKM
Ga0224902_10000173	F025477	GGA	MKIQYNAYQSIKLGKNTTEKDLYELFGDAVTVHDDKGNEIKDYFKHKYNKRNGWNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224902_100001

Overview

Ecosystem & Geography

Associated Families

Sequences