NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196895_1000065

Scaffold Ga0196895_1000065


Overview

Basic Information
Taxon OID3300022067 Open in IMG/M
Scaffold IDGa0196895_1000065 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11971
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043372Metagenome156N
F058959Metagenome134N
F071197Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0196895_100006515F071197N/AMNQLAPLTADIVAAKQGQQMSSLNDDDLGAFLRDEVKKALNRLGRKQIDPDVLKIAVEDIANDLRTKYRILTIEEVSIAFREGARRNEEHLFSSRTLAQWLETYMKEIRVKAFDHSIKPKKALPQETFDREEFIMKAFDRFNIGGGLYGAERLYHHLEKMGKINMTTIEKWQALKDTIDKEMDDTANCISNPVLRNSARKRMDELKAAKIEPTKAEEWIRVATMRHIVESYFRKCYLSKVSPV
Ga0196895_100006517F058959N/AMIEIRQKAERKFCNIGGLWYIFRKLLFAREVEVLIYFPDDMKNAHMSDIRARKYKPILGFKGMGRSQDICFRATSEGRIFETAKTYEDDRGRLLGVQELKASASNEIPVKAYMMSRRRGEWLPILPLHPYPSNSFRYRVAIRRVR
Ga0196895_100006524F043372N/ARMPFVQDGLIKVLQQNTLLIHVPFGDVIDIVRYLGDGRHSIGDGIVAVYNCFEDIDKTGDDLGLQSDHNAQTSTNT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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