NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196895_1000504

Scaffold Ga0196895_1000504


Overview

Basic Information
Taxon OID3300022067 Open in IMG/M
Scaffold IDGa0196895_1000504 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4070
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0196895_10005041F001655GGAGGVKQPENSHTKHFGNDGPIGNDAEIVVYYEERGPAEPVLRIPFWYCKDELGLFENFEASVHRTAKALAESYTYWPEGYVHVQTI
Ga0196895_100050410F008883AGGAGGMTFGRYTIWYNHEQHVWDIYDGNKGYKYPEYTVNNYSGLMNKLRDRFGFLDTDRNHRRFWRVMRWWDKLRHGRR
Ga0196895_10005044F023856AGGAGMRCRACDRILEESELTKKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTDDEKYDTLY
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Institute for Fundamental Biomedical Research
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