NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212021_1050284

Scaffold Ga0212021_1050284


Overview

Basic Information
Taxon OID3300022068 Open in IMG/M
Scaffold IDGa0212021_1050284 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046345Metagenome151N
F071183Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0212021_10502842F071183N/AMNTILKDEYKLTNDGDAWGNCMQWLFAICDYLTFEADECIPDEWQFRASPMGANEDCFCYQSLRHFAFENDITDNDVLEFGKVLIRLRDILEHKGLSY
Ga0212021_10502843F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYDVESFYEDCTYRQRKDIQSGWEANMLFDAWTFLNYVGWDACEALELK

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