NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1000015

Scaffold Ga0196889_1000015


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1000015 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47949
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (38.04%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0196889_100001561F001222N/AMIKGKTLIIETLRKVISEAAKIKFAGHQFVLKVDVNEDPQKKGLKIQFIPTTFGEMTPTEQNDIAIELEKRLEIGLEDYEMRVERDRNLKDKTIVAFFVYIEYFDKIVRKALSAQNPKDLPAPAPAPTTDPDQKQIA
Ga0196889_100001562F003188AGCAGMKSLKDVIRQSLKNHLDLKYRIKVNEPTQENMNKTLFIEVLEQLRKIEDRREFLEEEIGMDMTVYEDQFFAVIENLFKLAFNKEQLALIQLYLYQLVPDSEWDGTIVIEVQKQEETVSFKAPEDVWKVIQRYQK
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