NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196889_1000312

Scaffold Ga0196889_1000312


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1000312 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15267
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F021776Metagenome / Metatranscriptome217Y
F082545Metagenome113N
F103892Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0196889_100031211F103892N/AMSKLKFNHFTKIITINKQKFVPHKLHQLPKNYEEIPMSQQFSHKGFCYINSNELNWNSDKEARLTSNLAIGGLQSR
Ga0196889_100031217F082545N/AMDFTYITVLDFGSGKVYQYNLADVGDNYLFKDKDEPQCEEIEELLIDQGHNLFDTQWMIHADPTLNQIKL
Ga0196889_100031219F004523N/AMDYLSTEIKSAREAMTIFKILGIKDVTTDRQHKNGTTVYELPISQVWQTLQPKPIRFATYTTGYVRNVTEGLSSSYQINKTKPVVYESGMTGKERIMIDSWEERIIYLAKFIIKNYYQKTTYIMSDYVMNCLREAYVKDYNNKPSNRLPFGDEVQVIVNGHRYNLS
Ga0196889_100031222F021776N/AMTKHQLEIKLSTLQNLVIQKNEELTDYAAQIQRLNDELKDLNKPKLTGLQLDELYQTIEQGIESFDFDDADNFDVDFHIDYDNRIAIESMSFQNADELLRVVYNEARELFAEIKEDNNQENQD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.