NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1002146

Scaffold Ga0196889_1002146


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1002146 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5071
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010332Metagenome / Metatranscriptome305N
F069045Metagenome124N
F084451Metagenome112N
F095738Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0196889_10021461F069045AGGAGMQLPTGKRPRHYADDVIYGRSTLDQVPPDWRELILKHVQIACIQLGSQVARGRDRAARAAMLQRVPLVILPDVERLAKEYYSNKNSV
Ga0196889_100214610F010332GAGMSDRFNTALEPLWLLLEKGMIVRRGVLFVAIWMTLDSYAWAKIYAYNPDPDPLIYAALLGVPSALLAAALKFYNDGRQVVEK
Ga0196889_10021464F095738GGAMSTPEIDLRNMLNQEAYDEDLDDAYNHWVEYSVVPDLAKYLAAFDYDKFDSAVTNFKMFGADPIISWIFEMITDSYDVYYAFMMRERDDIDFNEIAETYVNAYVCLDHYIQYNEEVTLND
Ga0196889_10021466F084451GGAMTILQVMITLSVMMFCAQVAFNMLIEEMKWYWSVYTAVMTYTFVVLLLAVLANVETIFPQVLLKV
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