NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1005250

Scaffold Ga0196889_1005250


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1005250 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3011
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002322Metagenome / Metatranscriptome571Y
F010313Metagenome / Metatranscriptome305Y
F075856Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0196889_10052501F010313AGGAMTLEQNIIKGLDDAAIARVYHRKRQATHKAATFTQTLALWLFKATALANFGLIMFCLGYFSTLYSDGWLIEIPGLVSYWISFGGAQ
Ga0196889_10052503F075856AGGAGMKIEYRNLVFRKDSDKWHCFHAYEYEGDCLAHAAELTIDKPNLDFLPVLWRFDIGQYSVLDSD
Ga0196889_10052504F002322GAGGMLQKLPYSKVVEKAVLELIRGGVSVRQICPAISHLNDAPKSLSTLYKWYGTAIEAERAKINAAVGARVIDQALYGDVQDGITFKSQELFLRSKGGWSPQNTVNEVDQVVDPEVDEAAADTLMNLLGFNKDDDEGV
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