NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1000014

Scaffold Ga0224906_1000014


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1000014 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105890
Total Scaffold Genes145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (91.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022184Metagenome / Metatranscriptome215Y
F022786Metagenome / Metatranscriptome213Y
F044813Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_1000014121F022786GGAGMTDLILDEEKLMALEQAGMLKGRYYIVLEPVEDESEDEDGFAIRAYATKEFRGENEDGSYVDPTYVILQGLLGAVHENFDDVYEMGLERVTLEALGEVVPEEDLKEEHKKRIKGMEGNVIKADFGILQ
Ga0224906_1000014128F044813GAGMADSKAQLLNFTIELNRDGNIEFNLDCVDTVGMERILRKLGDPVYPHKIGNIVRHYFRVLQEKLKEERS
Ga0224906_1000014140F022184GGAMWTVYGIITIAMQPGFLQIVDRKEYENPQDCFKEAMVIMQNEEDPRGMSCIPVPDDKKTG
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