NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1000031

Scaffold Ga0224906_1000031


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1000031 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71802
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (55.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F008889Metagenome / Metatranscriptome326Y
F027870Metagenome193N
F033077Metagenome / Metatranscriptome178Y
F049702Metagenome / Metatranscriptome146Y
F053343Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100003133F027870N/AMAAFKVVQKIASVTDNATSASIPLKSGYLRITPAGGDAFVEVGTNPTATDDSSLFVPVDTPTVFKESVASIQTASVTNASAAIKFGFPSGTEAPFVVGDTVQVTGCAPSGINTTSASVTAVTGPDPINGVQSGTVTLGYGDANLSATDAVGEIRRVVKVAVRGSGKTHISEVQIVGDF
Ga0224906_100003166F008889GGAGMYTTEQFEKEVAGLRALIKMCDDLEKENDKKTNALIDQINGENSFSWRAN
Ga0224906_100003169F001419GAGGMMYEFDGYDEILKCYEGVTDQHASTSFEVGLMNELYYQLFREEF
Ga0224906_100003171F053343N/AMDRWWDNQRSGTNLPRQLGLGGYNEYININLSLHPYHHSIMNMTRKSTDELNAIVKALSKLSLLNTTEEDQRLFDAQQELRKRKREDDFINAHFQVITY
Ga0224906_100003176F033077N/AMTTPQPNNPTYKVLRLTTEGWTDFDSQTAVNLTKEQCDQVLKNLTQLEGIDFRELKAVRD
Ga0224906_100003180F049702GGAMTLIDFNKKELHDIYSALQYTRLETGFENESEVELYDRLTKLMDKVAKLRQVCNCQEGKK
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