Scaffold Ga0224906_1000116

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224906_1000116

Scaffold Ga0224906_1000116

Overview

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1000116 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	43840
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (90.28%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023578	Metagenome	209	Y
F023756	Metagenome / Metatranscriptome	209	Y
F027160	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100011634	F023578	AGGAGG	MYWEVGIKIGAESGQVTVHPAALQESVWNNAVEHALEMATALYPQQRIELEWVKEFGND
Ga0224906_100011637	F023756	AGGAG	MRNAKMSNEFDHDWNDVSVFEKLPVRKTAGKPKRDDWKRGRKAARKAKRMTQEMSNA
Ga0224906_100011656	F027160	GGA	MPVINGGSKFVTHATALANTNDTDVYVVPKNFSSHLEHLLITNSDASNRNYTIKYYEKAANTTYTLFTAHAVTGKGAESVFTVDKPLFLHAEDKIIVAAGTADTLTVVVAAEEFFDPAHS

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