NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1002661

Scaffold Ga0224906_1002661


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1002661 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8141
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005373Metagenome403N
F008722Metagenome329Y
F014263Metagenome264Y
F019923Metagenome227N
F044426Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100266112F005373AGGGGGMNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKIGYFKKG
Ga0224906_100266114F014263N/AMSDDRYITRDMLTEESYEGNNFAEGNAVKYDLQNGKINVICFCSDENVAKGIAEGLNLLDNLEADGIDLKK
Ga0224906_10026615F019923GAGGMAVDFEALDHIRAENKARVHEERKQMRVELAEYIEKCDSYELSKLYDEYKRIKRK
Ga0224906_10026616F044426AGGMKPVDKHLKELLYITGQSHANTSAFSSSFGKLALIRELVSEIEGLNLDNASRVKIKIWLDKHKKQLEAE
Ga0224906_10026619F008722GAGGMKKKMTMEDAINRIREAVEYYDMVHDTGEEKQTLKNKDYVWKGYDRLMDILKKQASEQKG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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