NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1002676

Scaffold Ga0224906_1002676


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1002676 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8111
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074765Metagenome119Y
F078604Metagenome116Y
F090494Metagenome108N
F092069Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100267611F074765GGAGMPKTATPKETKITVSKLQHMLSYRGWISYNCELRKGRTCLASVSQEGNGGDERVSWNNIDHYLLLHHWILDTQMDFWREYEVDGINGQVELGYKTFKDGIIEKLELRKKFNLWEKLAKKKPQRWPDAREIQQQLGFSDDMVGSWTTVYVENKLGDKYYD
Ga0224906_100267623F078604N/AMSNDFYIISTSATINSKPTKLDKAFKKDLVTNNGDLKPHVEKIIDNVFYYGKECINATIPTLFISIEYKDSNKDIYLIEHEVFLYEEDYPTLKDLENYKNKFNFNFASQVEPEVYEIVESFHQGFGCMCLSSEGY
Ga0224906_100267625F090494N/AFNRFKQMSTKHTQTFKAFQTKHNLSYSNFFTFSNPKVLKNEKISEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFINDYSIFLRYLVVNCFRHYSKNRTAEKVGFRLNGVSDYAFEDISVKLTSEDTDYIQKAFNIYIEPIRYGSVIEAVQKAIDLNDNKLLKSSVQFYDYTKRIDRNFDKAKKLNYHLTLSHGSKFDTFSKALELGLNYAAAFNLKKSQQLPTKFEYKGKSLNVIDGDITDFRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA
Ga0224906_10026763F092069N/AMTTVIFEYNGKSKEIPIDEIKSVNDVADAYEKLGLKSKIPVKRRLYYFLPNGKYHSFLSNKNHKYAVCCTEKDTKIGGDYTDDYAKAKDKAENLNRKMNNPEYGYRKWVVVDIKGGN

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