NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1003558

Scaffold Ga0224906_1003558


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1003558 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6843
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (48.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003869Metagenome / Metatranscriptome464Y
F006662Metagenome / Metatranscriptome367Y
F019152Metagenome231N
F037261Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10035581F019152AGGAGMEHTKGILFECNLSEEELNTIINSLNRDYKEEDAEILEKEYELQGKIREIISNFYQKLDAQKFTQMQVQSIKGSTL
Ga0224906_100355819F037261N/AMKKWILTDTFDFYSKDANYWNFTDFDEAKRIGESLVSTIGIVYLWKGTNGNPIKWMKFD
Ga0224906_100355822F003869N/AMRRKNYSRKHFYSITSMMTDEEIHTVWEIVGNALDRNGFVDADGELSIRVYDETLKRNVKVIDKSMRDY
Ga0224906_10035587F006662AGGMRTLTTKEYNLISQIYNSTDEIEASLSFEFGLQNDLYYSLFHSYEETK
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