NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1004239

Scaffold Ga0224906_1004239


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1004239 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6181
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F008114Metagenome339Y
F037990Metagenome167N
F051861Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10042391F006728N/AKMTKLDFNNIVVRHNGRTISIAQHWSRTSDGDFINTQEIADIDDLHHCEDYDPIRFDDTVDGLINALQAIKNDLTICNKDIEQ
Ga0224906_10042392F037990AGGAMTFDKPTARKIREAMQEALENAGIHGVTINVGNCSFTEGEATYKVKVLIDGAKSKDEQDLEQMASLMGFDTSKIASLQGMKVSLVSYNSRARKRPWVVQDLTTAQKYIIDDDTAKRLFGAEEKVS
Ga0224906_10042394F008114AGGAMMNLTINTKAFPDADPGMLQEMLGILPYWVREYNLLGEGMDIVEFMTERYGFGSLYQFKGDVQSDGTYSYPEDPDLPYVGKMNTPDGNVYFYEYAMLALPLPSGEYFVTRMD
Ga0224906_10042396F051861AGGAMIIEDQTVEVKVWDHNDAVIFVYENIHEKTDEIHESGVPVWRSYKKVVTAIPVNFTYCDSLSNDDKLVLVRKVSDALTELYAYEDGYEMGVSYYINHDQYVNA
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