NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1016519

Scaffold Ga0224906_1016519


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1016519 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2725
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F038719Metagenome165Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10165191F089953N/ALMEDLINEQILENIHEGYEIYKVTLDVLFEDLNGRVQNVADYEDEVIKYAIRERSCFADQDLKLVRHNDMSFFPTLYDAEQALSEIVQKKFEEQAQ
Ga0224906_101651911F038719AGGAGMNQKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDSAHDDLDQYQFGVTKKIMN
Ga0224906_10165199F018189GGAGMELSKEQMEKVLYELRCSYNSRIFDDENLYEIINLFETYLKGGETK
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