NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1017784

Scaffold Ga0224906_1017784


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1017784 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2602
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026851Metagenome196Y
F027158Metagenome195N
F081221Metagenome114N
F101070Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10177841F027158AGGAGMATTTKTPITDLTLAQVISLTQAGLIGLKDGSPVYTEKADRAAKAGATKARRQAVLADVAEFFASPRGQKAKFFSVKPTSGMFAACAVAINQNVEASREDILWSLKQLEKKGLAKQVGIKGEVVGENRGLPVKRMIIVPVSDVNNFQRRWVHSIEAAKAEEAPAQDDSAK
Ga0224906_10177842F101070GGAGGMGRGKIRVDPMKLEAGDLIVTDGRMMKELGNVLLAVRKLSDLELSQSNKRHPFVDGRRVGDHWRLLSRLGVVEIWLDPHASWVVQVVKGQKKTAT
Ga0224906_10177844F081221AGGAMDDILHALYNILILVTGFSAVICASLTAVALINLVSSSMLTYRDDRLLLAWALPSGLFFSGLLMVLLGWT
Ga0224906_10177846F026851AGGAMTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAHETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCERNMTIIATELEVHFDISA
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