NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1024672

Scaffold Ga0224906_1024672


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1024672 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2116
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044796Metagenome / Metatranscriptome154N
F091965Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10246724F044796GAGGMTYQPRNSMITDAIEKAWNNSNNQKEAAEKYLNMLRNDKVLRDAVTARHLQRIASEDVSRRSRLNRINFRLEAEKISKQKVLQKGEQTSPNVSFKNTAAAYSKNIFEYFHLPGLGIRLGDAMKSDLQHVVQNENKKMKTHHRNYKFLTAILEKMPDDKSVRDVWKSEDVEAIHTDVMVS
Ga0224906_10246726F091965AGGAMDKRYENETIAMIYRTWRNRQNMVRAEGKLVLQIKAICRGFADGEIKQANKLYSALKKGEATLDLITATQPLLDAREPLLKS
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