NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1026003

Scaffold Ga0224906_1026003


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1026003 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2046
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10260031F008883N/ARYTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSGIMGKLRDRLGFLDTDKNHRRFWRVMRWWDKLRHGRC
Ga0224906_10260035F024320AGGAGGVTFEEYEQGYYEGDSEDPSGPTEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYRHLEMLMVELHGKEWKDAL
Ga0224906_10260036F023856AGGAGMRCKACDRILEESELTRKDTHGNFLDLCGVCLSAVASAGVDTETMEYYQYEVFTEDKDYDTLY
Ga0224906_10260037F002858AGGAGMLIDEKSIYEVTGGDYSVYCSGYTQARTVTNDIMKQDPWGGIPFVLRLDLDLSFDDRGNVVMSRHTLDKILFIASDELPEGDE
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