NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1033507

Scaffold Ga0224906_1033507


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1033507 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1739
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F017755Metagenome / Metatranscriptome239Y
F031294Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10335071F017755GGAGMAKRGAIIDMGRHKAVGSSWRSMDSMAYSRSYEPESRPEFRCYVTGQADAMLDTYRKAKDKADALAILDSLL
Ga0224906_10335072F031294AGGMLQSNLIGDIQMKFEMLDLFLVAMLMVAIFFGLAMLSLHGIGYMTWLSWTMFGCSAWCLICGWGIVAYNLENRNG
Ga0224906_10335073F007621GAGGMQNSTSKSLTVVNNTLEAEGFALAKEYKSITKGDKARFTKATKADGFDTRLGKLMQKLKAEGGERINSQRLKDCGIDGIDKRRRSEALWFVENETACRDFIKASKKGFTSLTALQAAMKPKAPKKPKADKPEQPEADDKSNVGLDSEADKAETKSASDIAMQALLDCEMNGISKASFLAALKEQLEMLDAANTKAAA
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