NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1037458

Scaffold Ga0224906_1037458


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1037458 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1619
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F018289Metagenome236Y
F052260Metagenome / Metatranscriptome143N
F053978Metagenome140Y
F061779Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10374581F052260AGGAGMFVILATKPLNDGTKGFRFNFFGKKGIIRQRKLQSNGIKFTKGDCMNAYHFGKTTIYTEQSTNKTTARKFHHVAG
Ga0224906_10374582F018289AGGAGGMTTFTRQQLNDLRKQMQNALKMFALQGDLKIEVGNCSYNGGEATFKVKVLLKGAKTREQIDLEYYAELHKLDLTKIAKLQGEDMSLVGYKARARKKPWVLQRLRDGAEFVCEDRLASQFFKKEEANA
Ga0224906_10374583F004493AGGAGGMRNSVTKNNALDFTNDEWNQLIEGNGLLIMWFIEWNNKVEKGKDLQYYQTLQIQDFFKLKYRQSAGGDPWHMKNAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHIVRMD
Ga0224906_10374584F061779GAGGMLPDEMEAEKNRKIILAQADEIEILKRNVRDLQGQLNAAHIKNKRQLEQNAEAMVIIGHLQQEKDAKEEV
Ga0224906_10374585F053978AGGAGGMHINETTKQMIREIVVELFKEVASKQTFGVNDEVIQLDEHLHDWTGRKIDKYKVKVYGATLEERY
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Institute for Fundamental Biomedical Research
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