NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196907_100104

Scaffold Ga0196907_100104


Overview

Basic Information
Taxon OID3300022149 Open in IMG/M
Scaffold IDGa0196907_100104 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3482
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036202Metagenome / Metatranscriptome170N
F105098Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0196907_1001047F036202N/AMLPLYDYANRGKCVHCVFDNKERISPKAVYRIATSAMFGETELGEVRFHYSPVASEHAIGMYDKEGYYCTYCPPVPGAPGAQGLGRWIKHPWAEEEKQRQEAFD
Ga0196907_1001048F105098AGGAGGMPTKRLTRISTESGARQILQRMIDAGRITVEDLDKAPPGHINPQAYRNLMRDVAQPPKVEVVSPRDLSPTEEPLPF

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