NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196897_1002624

Scaffold Ga0196897_1002624


Overview

Basic Information
Taxon OID3300022158 Open in IMG/M
Scaffold IDGa0196897_1002624 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F093801Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0196897_10026242F093801GAGGMFRYPTENTTAPVCPYCQASHPEPEDLDESEAHCVACDDCGKLYAAVCDYQGWKTQCGGSHKWHALNGVRVCSRCGADG
Ga0196897_10026246F001873AGGAMKWWNIAAALAVLAGGADAEILMMSHDFTEFEHPFWATESDGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGFRYGIKRIPGAPVDDVSDFITNDWIQHHRDGAVEFGGNDSRGMVEFYAEQDISLQPGFLTVTLSNDREYAVWKFNGRVVYTHENRENNLQTFRIDIPDGLDQMRFEFSGSGTADGVIEHIEYHEYSTVPEPSLGDLIDLIGSGV
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