NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212022_1006319

Scaffold Ga0212022_1006319


Overview

Basic Information
Taxon OID3300022164 Open in IMG/M
Scaffold IDGa0212022_1006319 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F025171Metagenome203Y
F105514Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0212022_10063191F025171N/AIVSGNTFKVNNSEYKYSVSKSGGCIYNTVTGYVCNVEYVGRTKVKGYTFVLGKKVNVTLNLKTLEFVS
Ga0212022_10063193F004162N/AMGMNKKIDNLHKEKLKIEKEIENLQKICKHPTKSLKNVRERLDSTTMVIRWTCNICSSVVGIPNNNELQEYLKQ
Ga0212022_10063195F105514N/AMANSNKKPNPGQGKTPQQYEDSARFAWYGVVGMVVF
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