NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212020_1056554

Scaffold Ga0212020_1056554


Overview

Basic Information
Taxon OID3300022167 Open in IMG/M
Scaffold IDGa0212020_1056554 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029600Metagenome188Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0212020_10565541F032639N/ANLWNDLTNRMMKKQLINEDGFYAGSELKWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMGVIDEEIGDTIAYMIDEGQLNTEQ
Ga0212020_10565542F029600N/AMKYWNGEGQYQDLFDKHFKSLVPEIGRADTAEGNALRAIAKTNYDVFNNGAGNIVNQYEEMDDDGDYYTGYEINRWWEEYFDDIEDYSRLDVDRLKRKIIEYVQYDKDYGLSDLLDDYIDHIVLKVDNQS
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Institute for Fundamental Biomedical Research
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