NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212027_1012040

Scaffold Ga0212027_1012040


Overview

Basic Information
Taxon OID3300022168 Open in IMG/M
Scaffold IDGa0212027_1012040 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1189
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021099Metagenome220N
F082767Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0212027_10120401F082767N/AIFQQANTRGDAGIQLGGAMARAYGFDFFVDNQGSSHTAATVTDAVIASAEAVGQTALTIDNGSGSAATVSLAEGDIVTFGSAKGTDDFYTVESQTGTVLTIKEPLRKALANNDTINPVDIASGDTGREQFFYDPSALALVTAVMPSVDSGSGSGVRRAAGFEPMNNVNYTLTVEETKSGADILIEVLYGVKVFRPDLGGRYIRGNVAKA
Ga0212027_10120402F021099N/AMAFSDLTLTRNNIDALEELTFKGVNVTTGTTVLNLSEKDNLILGKAIKLLKTDILENLREYINDSTYATEAALLDAIHAADSEELLVDLLSYKFLELWFAQDATHRDSYSYEKARKYYGMYSQYLTANLRRLSGLLSKPKTTPRVRFMSLY
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