Scaffold Ga0212027_1024789

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212027_1024789

Scaffold Ga0212027_1024789

Overview

Basic Information
Taxon OID	3300022168 Open in IMG/M
Scaffold ID	Ga0212027_1024789 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	808
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → Candidatus Methanofastidiosum → unclassified Methanofastidiosum → Candidatus Methanofastidiosum sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.124826	Long. (^o)	-75.260873	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053652	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212027_10247891	F053652	AGG	MTFIYTVGDGSKYDDKELRYSLRSVDKYTDADVILVGHKPLWYQGEYHEVKDGDNAYVNKWRKITFACWLVDEFIQMDDDFILLAPYEPIVYKLNYTMLQKAYMRGRGQTDHSKMIWATAELCPDEPCYLLHTPLPVHSDTFIQVSNKYKWDEAPSIDPKQMYCIHF

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