NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1000078

Scaffold Ga0181353_1000078


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1000078 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19314
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F002985Metagenome / Metatranscriptome515Y
F042290Metagenome / Metatranscriptome158Y
F056552Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100007819F001120N/AMTKKSLISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNASPNGVKGSVSIPGTGLSIPNIKLI
Ga0181353_100007821F001807GGAGGMTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDVTDDY
Ga0181353_100007834F042290N/AMTLTYRGVKYEQEDQAQKDKAWWNLAHRPWLCLTYRNICYFPYVTGGQIK
Ga0181353_100007839F002985N/AMSYVIACWRWGTPHAITANSEANQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK
Ga0181353_100007844F056552N/AMTPTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESSIFECMKESSEAYFDSLSTQQYVMKW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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