NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1012014

Scaffold Ga0181353_1012014


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1012014 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2200
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026266Metagenome198Y
F045754Metagenome / Metatranscriptome152N
F073554Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10120142F045754N/AMIIDESKPWPFPSHFGDAHEDDKLKADCLELLQDFTAFQLRGEIYYGYLDVRALKVIEELRKDRDETKSST
Ga0181353_10120143F073554AGGAMSIEMMNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLNKAHSGHVAAQEDPFAW
Ga0181353_10120146F026266AGGAMSTIDTITFHFVGQLEDSGAIVTVQCQIDEDGDCRDLDSAMYQGINVLDVISHDQWKNLEWEASKKYKLEHNEQLTIDHDNKSTLEAIYGLLKPSFYIR
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