Scaffold Ga0196891_1006668

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0196891_1006668

Scaffold Ga0196891_1006668

Overview

Basic Information
Taxon OID	3300022183 Open in IMG/M
Scaffold ID	Ga0196891_1006668 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2358
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196891_10066682	F004131	GAGG	MRAKRTTVVADVSQFPFSAMRRQLITPLMREAAELLWPAERRRVTVLLRAPEFWDENTNADLEASEELADICFDLWVGR
Ga0196891_10066683	F002942	GGTGG	MSEEQFTAFSILLAAVSLPSVSLLYVLAWELWRYAKRAEQ
Ga0196891_10066684	F001873	GAGG	MKWWNVLAALAVLAGGAEAGVIVMSTDYTAGGVFVATPTDGKGELIQFDLTAVGGGGAVWLNADGFGNNHLERQYESGGFRYGIKRIPGAVPDDISELVTVDWIQHHRDGVVEFGGNDSRGMVEMFAESDISLQPGFLEITLRNDHEYALWSVNGQLLYEHISSQSNLQTFRHDLPNGLEGLRFDFAGSGTADGVIERIEYHEYSTVPEPSLGDLIDLIGSGIGGLIGW

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