NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079039_1269325

Scaffold Ga0079039_1269325


Overview

Basic Information
Taxon OID3300022185 Open in IMG/M
Scaffold IDGa0079039_1269325 Open in IMG/M
Source Dataset NameFreshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie, Old Woman Creek
CoordinatesLat. (o)41.384Long. (o)-82.513Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041496Metagenome / Metatranscriptome160Y
F081898Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0079039_12693251F081898N/APGGPRLVTESGLPSPEVAAPCRVLSLETLAPTLLRRSPYALGLRRLGFRVFTLQAPEKHLNDSRDPLVGFGSSSEAAQAPSRCPEPLVFQKPDAWSEPNAN
Ga0079039_12693252F041496GGAGMNWPGLHLPTACAFRFSQPPGAFIRPELAGLVSCRIRSWGHPSELSSSRAAVRCFQRLSPLGVLTAFRVFLRARVRHSAQRFRLKTERVALLGLFPSRVLPPSVLNRSSPVLPSCGYPIGCKQPNGLHFRVSRTESTACLSRDRRPSWGLWPSGRHARSSSARILESPPKAPGVRHRPLVGPSSNPCSTLPQPDITSLSAS
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