NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1000951

Scaffold Ga0196899_1000951


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1000951 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14648
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (97.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015716Metagenome / Metatranscriptome252Y
F016668Metagenome / Metatranscriptome245Y
F046646Metagenome / Metatranscriptome151Y
F048637Metagenome / Metatranscriptome148N
F050298Metagenome / Metatranscriptome145Y
F062168Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_100095110F016668AGGAMIPVGQLRLLLTKAGLEYVITRVDGNVAHVNIIVAEGSDVYS
Ga0196899_100095115F062168AGGAGMNDLKDFLKEMGLESVHPKPTVEKPDYMQPGYYVDPRNDKGEVLF
Ga0196899_100095120F046646AGGAMFVCLATKPLNDNTKGFRFNFFGIKGLTRKRKRISRGFSITKGNCMTHIHIGKRTVYLEKTINKVRSRRVRHFAG
Ga0196899_100095125F050298GGAMTKSITKIKDLGYGWTGTLYSDGTMRIQGDLQESDCIDLPKVSVDRLAHIFREIQDDWISSHL
Ga0196899_100095132F048637AGGAGMSVYMIFQRTNIDHERINNMPTSVYAKACFALGMPNKETVEDEISDGLFHGFYQPTMIMRDTQQRKRTPFEAIFDEGNGYGDETIVTTDIRKHPSMSVGDILLELSTGYAHVCMPIGWHGLDLTLELTSSIYKYN
Ga0196899_10009518F015716GGAGGMSEQGMYFLIGAFTMYVLALPLLYHMVEPEDPRDNNSGPIKFAFLWPVIALEIIYRIFVGEKDNDGTGTN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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