NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1004271

Scaffold Ga0196899_1004271


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1004271 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6249
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014252Metagenome264Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10042711F012872GGAMEKEAELYAALQIVSKELNGQESMTKEEVWDVFNILMDTSAVYRHITDYFNILDKKILEARVENGKLKQEMYDLRKQNASLEKTIEGFMNDF
Ga0196899_100427116F014252N/AMNEQDKETKILFYLLAFTIAMFALSVLALVYVYIHPTINLQ
Ga0196899_10042712F013704GAGGMDKGQRFYINNMEFVCMEVHAYLQTRVDGEKSDIDVGSSYYIVRNASTGSLHRIPFQKIIDKENEIKWMN
Ga0196899_10042716F016957N/AMHLRKYLKEGRNLSDARTAICVDVGKSGEALFKELTGAIKSELADDKQHIDFYWGDKKVDVKGLKKMHHSGFILLEFINVWGGNGWCSKNSKAEFIAFQFPNQFYVFKKSDLRERALELCEEFNQDNVIRKNWIPYDDAKYKWVGRYNAQDVFTYLKISDVDDLIYDLLPYTIKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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