NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1008323

Scaffold Ga0196899_1008323


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1008323 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017635Metagenome / Metatranscriptome239Y
F046345Metagenome151N
F049501Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10083231F049501N/ALKDLPIIRIVSEEEEMHIKMELEMEDETHDMLVKWGKEVASDEDYINIAITDGLKHGISSNK
Ga0196899_100832310F017635N/AMTSNNEPTFLPMNDLCDASLEALIQHYLSLKHKMPDNIAVRERLLELEREQFNREREASTIEGVIRQNTDNPL
Ga0196899_10083236F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYDVESFYEDCTYRQKRDIQSGWGANMLFDAWTFLNYIGWDACEGLELK
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