NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1012888

Scaffold Ga0196899_1012888


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1012888 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3247
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006015Metagenome383N
F012450Metagenome280N
F068775Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10128883F006015N/AMKTVFTFRQALEIVMFIMIVLFSKALKSQVPDSIYYVPFTFTTDETVGTSDSQAFIVYESKILPNTGVMTFEAIDKVMDSAQVSEYAFNLIYRNENLNWLDAARLMKREKLARLYAPVNDIIRSMEGYGFFVKTRLKFGDGFEGRWIARINGGDIIWLKVDRLMNVTETTMQGEVIEGGRTGKMLIYTENRFKVQTLFNEVIDFRDYWNKELDSDFFVIESEGNKVIMRKID
Ga0196899_10128884F012450N/AMKAIIDKLPNFDTVIKSSGFAVFVMFAMMSAMAYTLWNQYNNMNERLTKLEQEVIECYKENMLHNQGIIERNTKVMEEVLNNLNIK
Ga0196899_10128885F068775N/AMDKQELKSLVTAFGDLITAAAKLDSDKDGKIELTEIFTFVQTLVMKIASVYGSFPDAIKQFKDVKSAERKELIVAFADSFNLENKAAEELIEEW
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Institute for Fundamental Biomedical Research
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