Scaffold Ga0196899_1015871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0196899_1015871

Scaffold Ga0196899_1015871

Overview

Basic Information
Taxon OID	3300022187 Open in IMG/M
Scaffold ID	Ga0196899_1015871 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2865
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032086	Metagenome	181	Y
F047385	Metagenome / Metatranscriptome	150	Y
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_10158712	F032086	N/A	MTDNLTDQFLPMNDLCDDSLEALIQHYLSLKHRMPDNITVRERLLELEREQFEREKQTEDKE
Ga0196899_10158716	F068778	N/A	MNYLIGNHKIVEWGVFAEVEDSTDPELTQQIELVLPEHIQQEIYKLITDNIDQAKAIEALAQF
Ga0196899_10158718	F047385	N/A	MKIEQPTDNSLYVTIGNFTYYFDDSIDGENIVARWHLDDEETDTKEYLQLDNQLLNRS

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